“Factor-analysis methods for higher-performance neural
prostheses”
by G. Santhanam, B. M. Yu, V. Gilja, S. I. Ryu, A. Afshar, M. Sahani, and K. V. Shenoy.
J Neurophysiol, vol. 102, 2009, pp. 1315-1330.
“Gaussian-process factor analysis for low-dimensional
single-trial analysis of neural population activity”
by B. M. Yu, J. P. Cunningham, G. Santhanam, S. I. Ryu, K. V. Shenoy, and M. Sahani.
J Neurophysiol, vol. 102, 2009, pp. 614-635.
“Toward optimal target placement for neural prosthetic
devices”
by J. P. Cunningham, B. M. Yu, V. Gilja, S. I. Ryu, and K. V.
Shenoy.
J Neurophysiol, vol. 100, 2008, pp. 3445-3457.
“Detecting neural state transitions using hidden Markov
models for motor cortical prostheses”
by C. Kemere, G. Santhanam, B. M. Yu, A. Afshar, S. I. Ryu, T. H.
Meng, and K. V. Shenoy.
J Neurophysiol, vol. 100, 2008, pp. 2441-2452.
“Cortical neural prosthesis performance improves when eye
position is monitored”
by A. P. Batista, B. M. Yu, G. Santhanam, S. I. Ryu, A. Afshar, and
K. V. Shenoy.
IEEE Trans Neural Syst Rehabil Eng, vol. 16, no. 1, 2008,
pp. 24-31.
“Signal processing challenges for neural prostheses”
by M. D. Linderman, G. Santhanam, C. T. Kemere, V. Gilja, S.
O'Driscoll, B. M. Yu, A. Afshar, S. I. Ryu, K. V. Shenoy, and T. H.
Meng.
IEEE Signal Processing Magazine, vol. 25, no. 1, 2008, pp.
18-28.
“Techniques for extracting single-trial activity patterns
from large-scale neural recordings”
by M. M. Churchland, B. M. Yu, M. Sahani, and K. V. Shenoy.
Current Opinion in Neurobiology, vol. 17, no. 5, Oct. 2007,
pp. 609-618.
“Single-neuron stability during repeated reaching in
macaque premotor cortex”
by C. A. Chestek, A. P. Batista, G. Santhanam, B. M. Yu, A. Afshar,
J. P. Cunningham, V. Gilja, S. I. Ryu, M. M. Churchland, and K. V.
Shenoy.
J Neurosci, vol. 27, no. 40, 2007, pp. 10742-10750.
Supp Data
“Free paced high-performance brain-computer interfaces”
by N. Achtman, A. Afshar, G. Santhanam, B. M. Yu, S. I. Ryu, and K.
V. Shenoy.
J Neural Eng, vol. 4, 2007, pp. 336-347.
“Reference frames for reach planning in macaque dorsal
premotor cortex”
by A. P. Batista, G. Santhanam, B. M. Yu, S. I. Ryu, A. Afshar, and
K. V. Shenoy.
J Neurophysiol, vol. 98, 2007, pp. 966-983.
“Mixture of trajectory models for neural decoding of
goal-directed movements”
by B. M. Yu, C. Kemere, G. Santhanam, A. Afshar, S. I. Ryu, T. H.
Meng, M. Sahani, and K. V. Shenoy.
J Neurophysiol, vol. 97, 2007, pp. 3763-3780.
Issue cover
“A high-performance brain-computer interface”
by G. Santhanam, S. I. Ryu, B. M. Yu, A. Afshar, and K. V.
Shenoy.
Nature, vol. 442, 2006, pp. 195-198.
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“Neural variability in premotor cortex provides a signature
of motor preparation”
by M. M. Churchland, B. M. Yu, S. I. Ryu, G. Santhanam, and K. V.
Shenoy.
J Neurosci, vol. 26, no. 14, Apr. 2006, pp. 3697-3712.
“Neural decoding of movements: From linear to nonlinear
trajectory models”
by B. M. Yu, J. P. Cunningham, K. V. Shenoy, and M. Sahani.
In Neural Information Processing (ICONIP 2007), Part I,
vol. 4984, (M. Ishikawa, K. Doya, H. Miyamoto, and T. Yamakawa,
eds.), 2008, pp. 586-595. Talk.
“Neural dynamics of motor preparation and
execution”
by B. M. Yu.
Ph.D. dissertation, Stanford University, 2007.
“Gaussian-process factor analysis for low-dimensional
single-trial analysis of neural population activity”
by B. M. Yu, J. P. Cunningham, G. Santhanam, S. I. Ryu,
K. V. Shenoy, and M. Sahani.
In Advances in Neural Information Processing Systems 21, 2009, pp. 1881-1888.
“An efficient approximation for the real-time implementation
of the mixture of trajectory models decoder”
by W. Bishop, B. M. Yu, G. Santhanam, A. Afshar, S. I. Ryu, and K.
V. Shenoy.
In Proc IEEE Biomedical Circuits and Systems Conference,
2008, pp. 133-136.
“The use of a virtual integration environment for the
real-time implementation of neural decode algorithms”
by W. Bishop, B. M. Yu, G. Santhanam, A. Afshar, S. I. Ryu, K. V.
Shenoy, J. Vogelstein, J. Beaty, and S. Harshbarger.
In Proc 30th Annual Conf IEEE EMBS, 2008, pp. 628-633.
“A factor-analysis decoder for high-performance neural
prostheses”
by G. Santhanam, B. M. Yu, V. Gilja, S. I. Ryu, A. Afshar, M.
Sahani, and K. V. Shenoy.
In Proc. IEEE International Conference on Acoustics, Speech, and
Signal Processing (ICASSP), 2008, pp. 5208-5211.
“Inferring neural firing rates from spike trains using
Gaussian processes”
by J. P. Cunningham, B. M. Yu, K. V. Shenoy, and M. Sahani.
In Advances in Neural Information Processing Systems 20,
2008, pp. 329-336.
“Optimal target placement for neural communication
prostheses”
by J. P. Cunningham, B. M. Yu, and K. V. Shenoy.
In Proc 28th Annual Conf IEEE EMBS, 2006, pp. 2912-2915.
“Increasing the performance of cortically-controlled
prostheses”
by K. V. Shenoy, G. Santhanam, S. I. Ryu, A. Afshar, B. M. Yu, V. Gilja, M. D. Linderman, R. S. Kalmar, J. P. Cunningham, C. T. Kemere, A. P. Batista, M. M. Churchland, and T. H. Meng.
In Proc 28th Annual Conf IEEE EMBS, 2006, pp. 6652-6656.
“Expectation propagation for inference in non-linear dynamical
models with Poisson observations”
by B. M. Yu, K. V. Shenoy, and M. Sahani.
In Proc IEEE Nonlinear Statistical Signal Processing Workshop, 2006.
“Extracting dynamical
structure embedded in neural activity”
by B. M. Yu, A. Afshar, G. Santhanam, S. I. Ryu, K. V. Shenoy, and M. Sahani.
In Advances in Neural Information Processing Systems 18,
2006, pp. 1545-1552. Talk.
“A high performance neurally-controlled cursor positioning
system”
by G. Santhanam, S. I. Ryu, B. M. Yu, A. Afshar, and K. V. Shenoy.
In Proc 2nd IEEE EMBS Neural Eng, 2005, pp. 494-500.
“Model-based decoding of reaching movement for prosthetic
systems”
by C. Kemere, G. Santhanam, B. M. Yu, S. I. Ryu, T. H. Meng, and K. V. Shenoy.
In Proc 26th Annual Conf IEEE EMBS, 2004, pp. 4524-4528.
“Improving neural prosthetic system performance by combining
plan and peri-movement activity”
by B. M. Yu, S. I. Ryu, G. Santhanam, M. M. Churchland, and K. V. Shenoy.
In Proc 26th Annual Conf IEEE EMBS, 2004, pp. 4516-4519.
Talk.
“Influence of movement speed on plan activity in monkey
pre-motor cortex and implictions for high-performance neural
prosthetic systems design”
by K. V. Shenoy, M. M. Churchland, G. Santhanam, B. M. Yu, and S. I. Ryu.
In Proc 25th Annual Conf IEEE EMBS, 2003, pp. 1897-1900.
“Decoding of plan and peri-movement neural signals in
prosthetic systems”
by C. T. Kemere, G. Santhanam, B. M. Yu, K. V. Shenoy, and T. H. Meng.
In IEEE Workshop on Signal Processing Systems, Oct. 2002, pp. 276-283.
“Power-efficient multiple-subcarrier modulation scheme for optical wireless communications”
by B. Yu, J. M. Kahn, and R. You.
In Proc SPIE ITCom, 2002, pp. 41-53.
“Derivation of Kalman filtering and smoothing
equations”
by B. M. Yu, K. V. Shenoy, and M. Sahani.
Technical report, 2004.
“Derivation of extended Kalman filtering and smoothing
equations”
by B. M. Yu, K. V. Shenoy, and M. Sahani.
Technical report, 2004.
“Low-dimensional single-trial analysis of neural population activity”
by B. M. Yu, J. P. Cunningham, G. Santhanam, S. I. Ryu, K. V. Shenoy, and M. Sahani.
Dimensionality reduction for multi-channel neural recordings (Cosyne Workshop), 2009. Talk.
“Gaussian-process factor analysis for low-dimensional single-trial analysis of neural population activity”
by B. M. Yu, J. P. Cunningham, G. Santhanam, S. I. Ryu, K. V. Shenoy, and M. Sahani.
Computational and Systems Neuroscience (Cosyne) meeting, no. III-32, 2009.
“Low-dimensional single-trial analysis of neural population
activity”
by B. M. Yu, J. P. Cunningham, G. Santhanam, S. I. Ryu, K. V.
Shenoy, and M. Sahani.
Statistical Analysis and Modeling of Response Dependencies in
Neural Populations (NIPS Workshop), 2008. Talk.
“Single-trial analysis of neural population activity during
motor preparation”
by B. M. Yu, J. P. Cunningham, M. M. Churchland, G. Santhanam, S. I.
Ryu, K. V. Shenoy, and M. Sahani.
Proceedings of the Annual Symposium: Advances in Computational
Motor Control (Pre-SFN Symposium), (Emanuel Todorov and Reza
Shadmehr, eds.), vol. 7, 2008. Talk.
“Low-dimensional single-trial analysis of neural population
activity”
by B. M. Yu, J. P. Cunningham, G. Santhanam, S. I. Ryu, K. V.
Shenoy, and M. Sahani.
Dynamical Neuroscience XVI: Neuronal Variability and Its
Functional Significance (Pre-SFN Symposium), 2008.
“Gaussian process factor analysis for low-dimensional
single-trial analysis of neural population activity”
by B. M. Yu, J. P. Cunningham, G. Santhanam, S. I. Ryu, K. V.
Shenoy, and M. Sahani.
Soc Neurosci Abstr, no. 319.9, 2008. Talk.
“Evidence for smooth and inertial dynamics in the evolution
of neural state”
by A. Afshar, B. M. Yu, G. Santhanam, S. I. Ryu, K. V. Shenoy, and
M. Sahani.
Soc Neurosci Abstr, no. 319.8, 2008.
“Factor analysis based BCI decoding from spikes and
LFP”
by V. Gilja, B. M. Yu, G. Santhanam, A. Afshar, S. I. Ryu, and K. V.
Shenoy.
Soc Neurosci Abstr, no. 779.2, 2008.
“Towards optimal estimates of neural firing rates from
spike trains”
by J. P. Cunningham, B. M. Yu, V. Gilja, S. I. Ryu, K. V. Shenoy,
and M. Sahani.
Soc Neurosci Abstr, no. 862.10, 2008.
“Neural decoding of goal-directed reaches: scaling up the
number of reach goals”
by Z. Rivera Alvidrez, R. S. Kalmar, B. M. Yu, S. I. Ryu, and K. V.
Shenoy.
Soc Neurosci Abstr, no. 862.17, 2008.
“Absence of fast-timescale correlations in macaque dorsal
premotor cortex”
by C. A. Lehocky, G. Santhanam, A. Afshar, B. M. Yu, S. I. Ryu, J.
P. Cunningham, V. Gilja, K. V. Shenoy, and A. P. Batista.
Soc Neurosci Abstr, no. 262.12, 2008.
“Ensemble recordings of neural activity in the prefrontal
cortex during oculomotor choice behavior”
by J. B. Reppas, R. S. Kalmar, D. L. Kimmel, B. M. Yu, S. I. Ryu, K.
V. Shenoy, and W. T. Newsome.
Research in Encoding And Decoding of Neural Ensembles
(AREADNE), 2008.
“Single-trial representation of uncertainty about reach
goals in macaque PMd”
by Z. Rivera Alvidrez, R. Kalmar, A. Afshar, G. Santhanam, B. M. Yu,
S. I. Ryu, and K. V. Shenoy.
Computational and Systems Neuroscience (Cosyne) meeting, no. III-52, 2008.
“Extracting low-dimensional trajectories from multiple
spike trains”
by B. M. Yu, J. P. Cunningham, K. V. Shenoy, and M. Sahani.
Coherent Behavior in Neuronal Networks (CoBeNN), 2007.
“Extracting dynamical structure embedded in premotor
cortical activity”
by K. V. Shenoy, B. M. Yu, A. Afshar, M. M. Churchland, J. P.
Cunningham, and M. Sahani.
Neural Coding, Computation and Dynamics (NCCD), 2007.
“Inferring neural firing rates from spike trains using
Gaussian processes”
by J. P. Cunningham, B. M. Yu, M. Sahani, and K. V. Shenoy.
Neural Coding, Computation and Dynamics (NCCD), 2007.
“Single-trial representation of uncertainty about reach
goals in macaque PMd”
by Z. Rivera Alvidrez, R. Kalmar, A. Afshar, G. Santhanam, B. M. Yu,
S. I. Ryu, and K. V. Shenoy.
Soc Neurosci Abstr, no. 818.18, 2007.
“Optimal target placement for neural communication prostheses”
by J. P. Cunningham, B. M. Yu, and K. V. Shenoy.
Soc Neurosci Abstr, no. 256.21, 2006.
“Influence of eye position on end-point decoding accuracy in dorsal premotor cortex”
by A. P. Batista, B. M. Yu, G. Santhanam, S. I. Ryu, A. Afshar, and K. V. Shenoy.
Soc Neurosci Abstr, no. 148.8, 2006.
“Hidden Markov models for spatial and temporal estimation for prosthetic control”
by C. Kemere, B. M. Yu, G. Santhanam, S. I. Ryu, A. Afshar, T. H. Meng, and K. V. Shenoy.
Soc Neurosci Abstr, no. 256.17, 2006.
“The relationship between PMd neural activity and reaching behavior is stable in highly trained macaques”
by C. A. Chestek, A. P. Batista, B. M. Yu, G. Santhanam, S. I. Ryu, A. Afshar, and K. V. Shenoy.
Soc Neurosci Abstr, no. 148.5, 2006.
“Heterogeneous reference frames for reaching in macaque PMd”
by A. P. Batista, G. Santhanam, B. M. Yu, S. I. Ryu, A. Afshar, and K. V. Shenoy.
Neural Control of Movement Annual Meeting, no. F-12, 2006.
“Extracting dynamical structure embedded in motor preparatory activity”
by B. M. Yu, A. Afshar, G. Santhanam, S. I. Ryu, K. V. Shenoy, and M. Sahani.
Computational and Systems Neuroscience (Cosyne) meeting, no. 290, 2005.
“Feedback-directed state transition for recursive Bayesian estimation of goal-directed trajectories”
by B. M. Yu, G. Santhanam, S. I. Ryu, and K. V. Shenoy.
Computational and Systems Neuroscience (Cosyne) meeting, no. 291, 2005.
“Neural variability in premotor cortex provides a signature of motor preparation”
by M. M. Churchland, B. M. Yu, S. I. Ryu, G. Santhanam, and K. V. Shenoy.
Computational and Systems Neuroscience (Cosyne) meeting, no. 13, 2005.
“Mixture of trajectory models for neural decoding of goal-directed movements”
by B. M. Yu, C. Kemere, G. Santhanam, A. Afshar, S. I. Ryu, T. H. Meng, M. Sahani, and K. V. Shenoy.
Soc Neurosci Abstr, no. 520.18, 2005.
“Extracting dynamical structure embedded in neural activity”
by M. Sahani, B. M. Yu, A. Afshar, G. Santhanam, S. I. Ryu, and K. V. Shenoy.
Soc Neurosci Abstr, no. 689.14, 2005.
“Intra-cortical communication prosthesis design”
by G. Santhanam, S. I. Ryu, B. M. Yu, A. Afshar, and K. V. Shenoy.
Soc Neurosci Abstr, no. 519.19, 2005.
“Free-paced target estimation in a delayed-reach task”
by A. Afshar, N. Achtman, G. Santhanam, S. I. Ryu, B. M. Yu, and K. V. Shenoy.
Soc Neurosci Abstr, no. 401.13, 2005.
“Heterogeneous coordinate frames for reaching in macaque PMd”
by A. P. Batista, G. Santhanam, B. M. Yu, S. I. Ryu, A. Afshar, and K. V. Shenoy.
Soc Neurosci Abstr, no. 363.12, 2005.
“PMd delay activity during rapid sequential-movement plans”
by R. S. Kalmar, V. Gilja, G. Santhanam, S. I. Ryu, B. M. Yu, A. Afshar, and K. V. Shenoy.
Soc Neurosci Abstr, no. 519.17, 2005.
“Trial-by-trial mean normalization improves plan period reach target decoding”
by V. Gilja, R. S. Kalmar, G. Santhanam, S. I. Ryu, B. M. Yu, A. Afshar, and K. V. Shenoy.
Soc Neurosci Abstr, no. 519.18, 2005.
“Motor preparation and settling activity in PMd”
by M. M. Churchland, B. M. Yu, S. I. Ryu, G. Santhanam, and K. V. Shenoy.
Neural Control of Movement Annual Meeting, no. E-13, 2005.
“Improving neural prosthetic system performance for a fixed number of neurons”
by B. M. Yu, S. I. Ryu, M. M. Churchland, and K. V. Shenoy.
Computational and Systems Neuroscience (Cosyne) meeting, no. 219, 2004.
“Improving classification performance of neural prosthetic systems by combining plan and peri-movement activity”
by B. M. Yu, S. I. Ryu, G. Santhanam, M. M. Churchland, and K. V. Shenoy.
Soc Neurosci Abstr, no. 884.11, 2004.
“Time-course of PMd processing predicts reaction time”
by M. M. Churchland, B. M. Yu, S. I. Ryu, G. Santhanam, and K. V. Shenoy.
Soc Neurosci Abstr, no. 603.5, 2004.
“Coordinate frames for reaching in macaque dorsal premotor cortex (PMd)”
by A. P. Batista, B. M. Yu, G. Santhanam, S. I. Ryu, and K. V. Shenoy.
Soc Neurosci Abstr, no. 191.7, 2004.
“High speed neural prosthetic icon positioning”
by S. I. Ryu, G. Santhanam, B. M. Yu, and K. V. Shenoy.
Soc Neurosci Abstr, no. 263.1, 2004.
“High information transmission rates in a neural prosthetic system”
by G. Santhanam, S. I. Ryu, B. M. Yu, and K. V. Shenoy.
Soc Neurosci Abstr, no. 263.2, 2004.
“Reconstruction of arm trajectories from plan and peri-movement motor cortical activity”
by C. Kemere, G. Santhanam, S. I. Ryu, B. M. Yu, T. H. Meng, and K. V. Shenoy.
Soc Neurosci Abstr, no. 884.12, 2004.
“Reconstruction of arm trajectories from plan and peri-movement motor cortical activity”
by C. Kemere, G. Santhanam, S. I. Ryu, B. M. Yu, T. H. Meng, and K. V. Shenoy.
Annual Neural Prosthesis Program Meeting, National Institutes of Health, 2004.
“The speed at which reach movement plans can be decoded from the cortex and its implications for high performance neural prosthetic arm systems”
by S. I. Ryu, G. Santhanam, B. M. Yu, and K. V. Shenoy.
Annual Meeting Congress of Neurological Surgeons (CNS), vol. 55, no. 2, 2004. Article ID: 785.
“Premotor cortex plan activity used to decode upcoming reach speed for high-performance neural prosthetic system design”
by S. I. Ryu, B. M. Yu, M. M. Churchland, and K. V. Shenoy.
Annual Meeting American Association of Neurological Surgeons (AANS), 2004. Article ID: 19873.